Cavity-Rigidity Explorer

Cavity Based Plot

(each point is a cavity)

Surface Area

The surface area of the cavity in Ų

Residues in Cavity

The count of residues with participation in the cavity

Rigid Clusters in Cavity

The count of rigid clusters with participation in the cavity

Rigid Atoms in Cavity

The number of atoms that have participation in both rigid cluster(s) and the cavity

Total Rigid Atoms

The number of atoms comprising all of the rigid clusters with participation in the cavity

% Rigid Atoms in Cavity

The percentage of rigid atoms with participation in the cavity versus out of the cavity

Rigid Residues in Cavity

The number of amino acid residues that have participation in both rigid cluster(s) and the cavity

Total Rigid Residues

The number of residues that have participation in rigid clusters with participation in the cavity (although the residues themselves may not be participating in the cavity)

% Rigid Residues in Cavity

Percentage of residues with participation in both rigid clusters and cavities, versus those in just rigid clusters

Total Rigid Residue Atoms

The total count of all of the atoms in all of the residues with participation in rigid clusters that have participation in cavities (individual atoms themselves may or may not be participating in rigid clusters or cavities)

Mean Evolutionary Trace

The mean real-value Evolutionary Trace score of all of the residues with participation in the cavity

Median Evolutionary Trace

The median real-value Evolutionary Trace score of all of the residues with participation in the cavity